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"Error while loading shared libraries: libnotes.so: cannot open shared object file: No such file or directory."
After some research I found, this was not the case on a partitioned server - only on a non-partitioned server. So I started to look for the files and how they are organized. After some research I found out that there were some links missing.
After applying these links, the problem was solved.
/usr/lib:
ln -s /opt/ibm/lotus/notes/latest/linux/libnotes.so /usr/lib/libnotes.so
ln -s /opt/ibm/lotus/notes/latest/linux/libndgts.so /usr/lib/libndgts.so
ln -s /opt/ibm/lotus/notes/latest/linux/libxmlproc.so /usr/lib/libxmlproc.so